Projects per year
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Profiles
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Jean-Pierre Kocher, PhD
- Rochester, MN, Biomedical Statistics and Informatics - Professor
Person: Faculty
Projects
- 3 Finished
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Bioinformatics Shared Resource
Kocher, J.-P. (PI) & Kocher, J.-P. J. A. (PI)
3/1/19 → 2/29/24
Project: Research project
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Mayo Clinic Comprehensive Cancer Center Support Grant
Adjei, A. (CoPI), Alberts, S. R. (CoPI), Ames, M. M. (CoPI), Beebe, T. J. (CoPI), Buckner, J. C. (CoPI), Chute, C. G. (CoPI), Cunningham, J. M. (CoPI), Diasio, R. B. (CoPI), Federspiel, M. J. (CoPI), Grendahl, D. (CoPI), Highsmith, E. W. (CoPI), Jenkins, R. B. (CoPI), Leibson, P. J. (CoPI), Lingle, W. L. (CoPI), Mc Cormick, D. J. (CoPI), Prendergast, F. G. (CoPI), Raghavakaimal, S. (CoPI), Salisbury, J. L. (CoPI), Sargent, D. J. (CoPI), Van Deursen, J. (CoPI), Wettstein, P. J. (CoPI), Wieben, E. D. (CoPI), Banks, P. M. (CoPI), Burnham, N. R. (CoPI), Clapham, D. (CoPI), David, C. S. (CoPI), Dewald, G. W. (CoPI), Held, K. (CoPI), Ingle, J. N. (CoPI), Katzmann, J. A. (CoPI), Katzmann, J. A. (CoPI), Kline, B. (CoPI), Kovach, J. S. (CoPI), Liebson, P. (CoPI), Maihle, N. J. (CoPI), McCormick, D. J. (CoPI), McKean, D. J. (CoPI), Moertel, C. G. (CoPI), O'Connell, M. J. (CoPI), O'Fallon, J. R. (CoPI), Prendergast, F. G. (CoPI), Roche, P. C. (CoPI), Spelsburg, T. C. (CoPI), Thibodeau, S. N. (CoPI), Weiland, L. H. (CoPI), Wieand, H. S. (CoPI), Wiebeu, E. D. (CoPI), Wold, L. (CoPI), Willman, C. (PI), Ames, M. (CoPI), Anastasiadis, P. Z. (CoPI), Ansell, S. M. (CoPI), Degnim, A. A. C. (CoPI), Baker, D. J. (CoPI), Bekaii-Saab, T. (CoPI), Borad, M. J. (CoPI), Horazdovsky, B. B. F. (CoPI), Cerhan, J. R. (CoPI), Cicek, M. (CoPI), Colon-Otero, G. (CoPI), Dispenzieri, A. (CoPI), Doubeni, C. C. A. (CoPI), Dueck, A. C. (CoPI), Finnes, H. D. (CoPI), Flotte, T. J. (CoPI), Odedina, F. F. T. (CoPI), Fonseca, R. (CoPI), Galanis, E. (CoPI), Goetz, M. P. (CoPI), Greipp, P. T. (CoPI), Nowakowski, G. G. S. (CoPI), Highsmith, W. E. (CoPI), Jatoi, A. (CoPI), Summer Bolster, J. J. (CoPI), Villasboas, J. J. C. (CoPI), Knutson, K. L. (CoPI), Kocher, J.-P. (CoPI), Kumar, S. K. (CoPI), Kwon, E. D. (CoPI), Ballman, K. K. V. (CoPI), Van Abel, K. K. (CoPI), Loprinzi, C. L. (CoPI), Rutten, L. L. J. (CoPI), Sherman, M. E. (CoPI), Mc Niven, M. A. (CoPI), O'connell, M. M. J. (CoPI), Lawson, M. M. A. (CoPI), Okuno, S. H. (CoPI), Pandey, A. (CoPI), Pease, L. R. (CoPI), Pitot, H. C. (CoPI), Pitot, J. ,. H. C. (CoPI), Radecki Breitkopf, C. (CoPI), Reid, J. M. (CoPI), Weinshilboum, R. M. (CoPI), Sarkaria, J. N. (CoPI), Kaufmann, S. S. H. (CoPI), Murphy, S. S. J. (CoPI), Vile, R. G. (CoPI), Welter, J. C. (CoPI) & Yost, K. J. (CoPI)
3/1/85 → 2/28/26
Project: Research project
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Haplotype-resolved genome assemblies of BJ and IMR-90 human fibroblast cell lines reveal extensive structural variation and enable reanalysis of historical sequencing data
Ranallo-Benavidez, T. R., Hao, Y., Volpe, E., Jehangir, M., Fukushima, N., Stephens, Z. D., Mbegbu, O., Ungaro, M. T., Reiman, R., Molnar, J., Murphy, D., Paredes, D. M., Wong, S., Karaniuk, K., Buchholtz, S., Kocher, J. P., Keats, J., Machiela, M. J., Kolmogorov, M. & Paten, B. & 2 others, , May 8 2026, In: Nucleic acids research. 54, 8Research output: Contribution to journal › Article › peer-review
Open Access -
Immunopipe: a comprehensive and flexible scRNA-seq and scTCR-seq data analysis pipeline
Wang, P., Yu, Y., Dong, H., Zhang, S., Sun, Z., Zeng, H., Mondello, P., Kocher, J. P. A., Wang, J., Asmann, Y. W., Lin, Y. & Li, Y., Jun 1 2025, In: NAR Genomics and Bioinformatics. 7, 2, lqaf063.Research output: Contribution to journal › Article › peer-review
Open Access -
Characterization of telomere variant repeats using long reads enables allele-specific telomere length estimation
Stephens, Z. & Kocher, J. P., Dec 2024, In: BMC bioinformatics. 25, 1, 194.Research output: Contribution to journal › Article › peer-review
Open Access