Rochester, MN

2023

Artificial intelligence-enabled operating room data analysis: Current and future prospects for enhancing surgical safety

Tetteh, E., Wang, T., Norasi, H., Kim, J., Cleary, S. & Hallbeck, M. S., 2023, In: Proceedings of the Human Factors and Ergonomics Society. 67, 1, p. 2079-2081 3 p.

Research output: Contribution to journal › Conference article › peer-review

Development and application of a computable genotype model in the GA4GH Variation Representation Specification

Goar, W., Babb, L., Chamala, S., Cline, M., Freimuth, R. R., Hart, R. K., Kuzma, K., Lee, J., Nelson, T., Prlić, A., Riehle, K., Smith, A., Stahl, K., Yates, A. D., Rehm, H. L. & Wagner, A. H., 2023, In: Pacific Symposium on Biocomputing. 2023, p. 383-394 12 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

FHIR-Ontop-OMOP: Querying OMOP clinical databases as FHIR-compliant Clinical Knowledge Graphs

Xiao, G., Pfaff, E., Prud'Hommeaux, E., Booth, D., Sharma, D. K., Huo, N., Yu, Y., Zong, N., Ruddy, K. J., Chute, C. G. & Jiang, G., 2023, In: CEUR Workshop Proceedings. 3415, p. 165-166 2 p.

Research output: Contribution to journal › Conference article › peer-review

Neck extensor fatigue: Comparing the effect of 45 degrees of neck flexion to the effect of 45 degrees of trunk flexion

Norasi, H., Hallbeck, M. S. & Mirka, G. A., 2023, In: Proceedings of the Human Factors and Ergonomics Society. 67, 1, p. 2353-2358 6 p.

Research output: Contribution to journal › Conference article › peer-review

Quantifying factors that affect polygenic risk score performance across diverse ancestries and age groups for body mass index

Hui, D., Xiao, B., Dikilitas, O., Freimuth, R. R., Irvin, M. R., Jarvik, G. P., Kottyan, L., Kullo, I., Limdi, N. A., Liu, C., Luo, Y., Namjou, B., Puckelwartz, M. J., Schaid, D., Tiwari, H., Wei, W. Q., Verma, S., Kim, D. & Ritchie, M. D., 2023, In: Pacific Symposium on Biocomputing. 2023, p. 437-448 12 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

REMEDI: REinforcement learning-driven adaptive MEtabolism modeling of primary sclerosing cholangitis DIsease progression

Hu, C., Saboo, K. V., Ali, A. H., Juran, B. D., Lazaridis, K. N. & Iyer, R. K., 2023, In: Proceedings of Machine Learning Research. 225, p. 157-189 33 p.

Research output: Contribution to journal › Conference article › peer-review

The Effects of Variable Tension Forces on Exoskeletons’ Effectiveness

Kim, J. Y. M., Stone, R., Hallbeck, M. S. & Norasi, H., 2023, In: Proceedings of the Human Factors and Ergonomics Society. 67, 1, p. 1958-1964 7 p.

Research output: Contribution to journal › Conference article › peer-review

2022

Application of Emerging Innovations in Microbiome Science to Space Development and Settlement Systems

Nastasi, N., Anderson, M. Z., Balasubrahmaniam, N., Bope, A., Britt, R. D., Cochran, S. J., Gill, S. J., Hegarty, B., Lee, J., Stamps, B. W., Stickney, A., Taylor, C. G., Tram, N. K., Van Dusen, J., Varaljay, V. A., Weir, M. H., Horack, J. M., Oglesbee, M., Sullivan, M. B. & Dannemiller, K. C., 2022, In: Proceedings of the International Astronautical Congress, IAC. 2022-September

Research output: Contribution to journal › Conference article › peer-review

From fat droplets to floating forests: cross-domain transfer learning using a PatchGAN-based segmentation model

Mantha, K. B., Sankar, R., Zheng, Y., Fortson, L., Pengo, T., Mashek, D., Sanders, M., Christensen, T., Salisbury, J., Trouille, L., Byrnes, J. E. K., Rosenthal, I., Houskeeper, H. & Cavanaugh, K., 2022, In: CEUR Workshop Proceedings. 3318

Research output: Contribution to journal › Conference article › peer-review

Investigating the Impact of Speech Compression on the Acoustics of Dysarthric Speech

Tran, K., Xu, L., Stegmann, G., Liss, J., Berisha, V. & Utianski, R. L., 2022, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 2022-September, p. 2263-2267 5 p.

Research output: Contribution to journal › Conference article › peer-review

Lung Ultrasound Surface Wave Elastography for assessing water content in a Sponge Phantom Model

Zhou, J. & Zhang, X., May 23 2022, In: Proceedings of Meetings on Acoustics. 46, 1, 20001.

Research output: Contribution to journal › Conference article › peer-review

Open Access

Teaching Assistant Team in a Graduate-Level Engineering Course

Holmes, P. M., Leng, S. & McCollough, C., Aug 23 2022, In: ASEE Annual Conference and Exposition, Conference Proceedings.

Research output: Contribution to journal › Conference article › peer-review

2021

Correlation between workload and teamwork among residents in DIEP Flap surgery

Norasi, H., Wang, T., Law, K. E., Harless, C., Hallbeck, M. S. & Nguyen, M. D., 2021, In: Proceedings of the Human Factors and Ergonomics Society. 65, 1, p. 1210-1214 5 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

Domain-guided Self-supervision of EEG Data Improves Downstream Classification Performance and Generalizability

Wagh, N., Wei, J., Rawal, S., Berry, B., Barnard, L., Brinkmann, B., Worrell, G., Jones, D. & Varatharajah, Y., 2021, In: Proceedings of Machine Learning Research. 158, p. 130-142 13 p.

Research output: Contribution to journal › Conference article › peer-review

Engineering Prone Patient Positioning for Spine Surgery to Reduce Risk of Clinician Injury

Lowndes, B. R., Kraft, S., Asiedu, G. B., Woolley, S., Loynes, L., Huddleston, P. H. & Hallbeck, M. S., 2021, In: Proceedings of the Human Factors and Ergonomics Society. 65, 1, p. 515-519 5 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

Introducing Exoskeletons into the Operating Room: A pilot study with vascular surgeons

Wang, T., Mendes, B. C., Hallbeck, M. S., Tetteh, E., Smith, T. & Norasi, H., 2021, In: Proceedings of the Human Factors and Ergonomics Society. 65, 1, p. 1376-1380 5 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

Localization of High-concentration Microbubbles for Ultrasound Localization Microscopy by Self-Supervised Deep Learning

Li, Y., Huang, L., Zhang, J., Huang, C., Chen, S. & Luo, J., 2021, In: IEEE International Ultrasonics Symposium, IUS.

Research output: Contribution to journal › Conference article › peer-review

2020

Coverage profile correction of shallow-depth circulating cell-free DNA sequencing via multidistance learning

Larson, N. B., Larson, M. C., Na, J., Sosa, C. P., Wang, C., Kocher, J. P. & Rowsey, R., 2020, In: Pacific Symposium on Biocomputing. 25, 2020, p. 599-610 12 p.

Research output: Contribution to journal › Conference article › peer-review

The role of connectedness for minoritized students at a mentoring conference

Queener, C., Mondisa, J. L., Davis, D. & Blocker, R. C., Jun 22 2020, In: ASEE Annual Conference and Exposition, Conference Proceedings. 2020-June, 1405.

Research output: Contribution to journal › Conference article › peer-review

2019

Detecting potential pleiotropy across cardiovascular and neurological diseases using univariate, bivariate, and multivariate methods on 43,870 individuals from the eMERGE network

Zhang, X., Veturi, Y., Verma, S., Bone, W., Verma, A., Lucas, A., Hebbring, S., Denny, J. C., Stanaway, I. B., Jarvik, G. P., Crosslin, D., Larson, E. B., Rasmussen-Torvik, L., Pendergrass, S. A., Smoller, J. W., Hakonarson, H., Sleiman, P., Weng, C., Fasel, D., Wei, W. Q., & 4 othersKullo, I., Schaid, D., Chung, W. K. & Ritchie, M. D., 2019, In: Pacific Symposium on Biocomputing. 24, 2019, p. 272-283 12 p.

Research output: Contribution to journal › Conference article › peer-review

5 Scopus citations

Ergonomic Education and Training for Surgical Assistant Trainees

Linden, A. R., Hallbeck, M. S., Morrow, M., Gas, B., Olson, H. & Lowndes, B. R., 2019, In: Proceedings of the Human Factors and Ergonomics Society. 63, 1, p. 688-692 5 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

FIRST AND IMMEDIATE RESPONDERS: CURRENT CAPABILITY NEEDS AND RESEARCH CHALLENGES

Prytz, E. G., Hallbeck, S., Goolsby, C., Jonson, C. O., Langhelm, R., Mehta, R. K., Peres, S. C. & Wilson, D. P., 2019, In: Proceedings of the Human Factors and Ergonomics Society. 63, 1, p. 640-641 2 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

Lead Vest/Apron and Back Pain in Interventional Radiology and Endovascular Surgery: A Scoping Review

Tetteh, E., Hallbeck, M. S. & Mirka, G., 2019, In: Proceedings of the Human Factors and Ergonomics Society. 63, 1, p. 1367-1368 2 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

Optimizing Surgical Tools for Single-Site Surgery: A Cadaver-Based Design Study

McCrory, B., Cuevas, A., Alborano, J., Lowndes, B. R. & Hallbeck, M. S., 2019, In: Proceedings of the Human Factors and Ergonomics Society. 63, 1, p. 1249-1253 5 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

PSB 2019 workshop on text mining and visualization for precision medicine

Gonzalez-Hernandez, G., Lu, Z., Leaman, R., Weissenbacher, D., Boland, M. R., Chen, Y., Du, J., Fluck, J., Greene, C. S., Holmes, J., Kashyap, A., Nielsen, R. L., Ouyang, Z., Schaaf, S., Taroni, J. N., Tao, C., Zhang, Y. & Liu, H., 2019, In: Pacific Symposium on Biocomputing. 24, 2019, p. 449-454 6 p.

Research output: Contribution to journal › Conference article › peer-review

Surgical Specialty and Case Number May Influence Surgeon Workload

Niichel, M. K., Lowndes, B. R., Linden, A. R., Blocker, R. C., Hallbeck, M. S. & Law, K. E., 2019, In: Proceedings of the Human Factors and Ergonomics Society. 63, 1, p. 679-682 4 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

2018

Acoustic navigation of intramyocardial injection needle catheter using color doppler echocardiography

Katayama, M., Kumar, V., Zarbatany, D., Vaitkus, V., Fortuin, D., Fatemi, M. & Belohlavek, M., 2018, In: IEEE International Ultrasonics Symposium, IUS. 2018-January, 8579717.

Research output: Contribution to journal › Conference article › peer-review

Considerations for automated machine learning in clinical metabolic profiling: Altered homocysteine plasma concentration associated with metformin exposure

Orlenko, A., Moore, J. H., Orzechowski, P., Olson, R. S., Cairns, J., Caraballo, P. J., Weinshilboum, R. M., Wang, L. & Breitenstein, M. K., 2018, In: Pacific Symposium on Biocomputing. 0, 212669, p. 460-471 12 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

15 Scopus citations

Measured Fractional Calculus Parameters for Shear Waves in Swine Liver

Grosz, S. A., Pereira, R., Urban, M. W., Humphrey, T. & McGough, R. J., 2018, In: IEEE International Ultrasonics Symposium, IUS. 2018-January, 8580193.

Research output: Contribution to journal › Conference article › peer-review

Parallel Implementation of Randomized Singular Value Decomposition and Randomized Spatial Downsampling for Real Time Ultrafast Microvessel Imaging on a Multi-Core CPUs Architecture

Lok, U. W., Song, P., Trzasko, J. D., Borisch, E. A., Daigle, R. & Chen, S., 2018, In: IEEE International Ultrasonics Symposium, IUS. 2018-January, 8579678.

Research output: Contribution to journal › Conference article › peer-review

3 Scopus citations

2017

Detection of increased vasa vasorum in artery walls: Improving CT number accuracy using image deconvolution

Rajendran, K., Leng, S., Jorgensen, S. M., Abdurakhimova, D., Ritman, E. L. & McCollough, C. H., Feb 3 2017, In: Proceedings of SPIE - The International Society for Optical Engineering. 10327, 135.

Research output: Contribution to journal › Conference article › peer-review

EEG-GRAPH: A factor-graph-based model for capturing spatial, temporal, and observational relationships in electroencephalograms

Varatharajah, Y., Chong, M. J., Saboo, K., Berry, B., Brinkmann, B., Worrell, G. & Iyer, R., 2017, In: Advances in Neural Information Processing Systems. 2017-December, p. 5372-5381 10 p.

Research output: Contribution to journal › Conference article › peer-review

6 Scopus citations

Harnessing big data for precision medicine: Infrastructures and applications

Yu, K. H., Hart, S. N., Goldfeder, R., Zhang, Q. C., Parker, S. C. J. & Snyder, M., 2017, In: Pacific Symposium on Biocomputing. 0, 212679, p. 635-639 5 p.

Research output: Contribution to journal › Conference article › peer-review

4 Scopus citations

2016

Comparison of provider experience with two patient examination tables

Abdelrahman, A., Yu, D., Cohen, T., Hallbeck, S. & Woolley, S., 2016, In: Proceedings of the Human Factors and Ergonomics Society. p. 593-597 5 p.

Research output: Contribution to journal › Conference article › peer-review

Preventing our caregivers from becoming patients - Challenges, successes, and trends faced by hospital risk managers and ergonomists

Wiggermann, N., Hallbeck, S., James, T., Kumpar, D., Williamson, R. & Wolf, L., 2016, In: Proceedings of the Human Factors and Ergonomics Society. p. 964-968 5 p.

Research output: Contribution to journal › Conference article › peer-review

Real-time remote physiological monitoring: The role of communication in three paradigms of inpatient care

Ardoin, W. J., Hoyle, W. S., Bewaji, O., Ferris, T. K., Peres, S. C., Hallbeck, S., Kaplan, R. & Brady, P. A., 2016, In: Proceedings of the Human Factors and Ergonomics Society. p. 618-622 5 p.

Research output: Contribution to journal › Conference article › peer-review

Towards a standard ontology metadata model

Min, H., Turner, S., De Coronado, S., Davis, B., Whetzel, T., Freimuth, R. R., Solbrig, H. R., Kiefer, R., Riben, M., Stafford, G. A., Wright, L. & Ohira, R., 2016, In: CEUR Workshop Proceedings. 1747

Research output: Contribution to journal › Conference article › peer-review

1 Scopus citations

Translational bioinformatics 101

Tenenbaum, J. D., Madhavan, S., Freimuth, R. R., Denny, J. C. & Frey, L., 2016, In: Pacific Symposium on Biocomputing. p. 552-556 5 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

2015

A web application towards semiotic-based evaluation of biomedical ontologies

Amith, M. & Tao, C., 2015, In: CEUR Workshop Proceedings. 1428

Research output: Contribution to journal › Conference article › peer-review

5 Scopus citations

Developing a modular architecture for creation of rule-based clinical diagnostic criteria

Hong, N., Jiang, G., Pathak, J. & Chute, C. G., 2015, In: CEUR Workshop Proceedings. 1428

Research output: Contribution to journal › Conference article › peer-review

Neutron activation analysis with a Monte Carlo simulation for kidney stones

Sahiner, H., Srivastava, A., Liu, X. & McCollough, C. H., 2015, In: Transactions of the American Nuclear Society. 113, p. 481-482 2 p.

Research output: Contribution to journal › Conference article › peer-review

2014

2 Scopus citations

Drug target prediction for colorectal cancer by combining ontology and network approaches

Tao, C., Sun, J., Zheng, W. J., Chen, J. & Xu, H., 2014, In: CEUR Workshop Proceedings. 1327, p. 67 1 p.

Research output: Contribution to journal › Conference article › peer-review

Exploring the pharmacogenomics knowledge base (pharmgkb) for repositioning breast cancer drugs by leveraging Web ontology language (owl) and cheminformatics approaches

Zhu, Q., Tao, C., Shen, F. & Chute, C. G., 2014, In: Pacific Symposium on Biocomputing. p. 172-182 11 p.

Research output: Contribution to journal › Conference article › peer-review

24 Scopus citations

GSO: A semantic web ontology to capture 3D genome structure

Zheng, W. J., Du, J., Tang, J. & Tao, C., 2014, In: CEUR Workshop Proceedings. 1320

Research output: Contribution to journal › Conference article › peer-review

Implementing iterative algorithms with SPARQL

Techentin, R. W., Gilbert, B. K., Lugowski, A., Deweese, K., Gilbert, J., Dull, E., Hinchey, M. & Reinhardt, S. P., 2014, In: CEUR Workshop Proceedings. 1133, p. 216-223 8 p.

Research output: Contribution to journal › Conference article › peer-review

6 Scopus citations

Ontology-based normalization for disease-lab test relation extraction

Zhang, Y., Wang, J., Tao, C. & Xu, H., 2014, In: CEUR Workshop Proceedings. 1327, p. 87-89 3 p.

Research output: Contribution to journal › Conference article › peer-review

Rochester, MN

Research output

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