TY - JOUR
T1 - Feasibility of Large-Scale Identification of Sessile Serrated Polyp Patients Using Electronic Records
T2 - A Utah Study
AU - Affolter, Kajsa
AU - Gligorich, Keith
AU - Samadder, Niloy Jewel
AU - Samowitz, Wade S.
AU - Curtin, Karen
N1 - Funding Information:
This work was funded by a pilot award (to KC) from the Huntsman Cancer Institute, Colon Cancer Program. Partial support for all datasets within the Utah Population Database and the Biorepository and Molecular Pathology Shared Resource is provided by the University of Utah Huntsman Cancer Institute and the Huntsman Cancer Institute Cancer Center Support Grant, P30 CA2014 from the National Cancer Institute, National Institutes of Health. Support for the Utah Cancer Registry is provided by Contract No. HHSN2612013000171 from the National Cancer Institute with additional support from the Utah Department of Health.
Publisher Copyright:
© 2017, Springer Science+Business Media New York.
PY - 2017/6/1
Y1 - 2017/6/1
N2 - Background/Aims: The serrated pathway accounts for 15–25% of sporadic colorectal cancer (CRC). In our study, we sought to accurately characterize sessile serrated polyps (SSP) in a population by electronically interrogating colonoscopy patients’ endoscopy and pathology reports using a rules-based text search of pre-defined SSP-related terms. To this aim, we compared a sample of putative SSP and hyperplastic polyps (HP) using our algorithm to a determination of SSP or HP by pathologist and molecular examination to determine the feasibility of large-scale identification of SSP in electronic medical records. Methods: In 23,990 endoscopy reports from colonoscopies with pathology performed at a University of Utah Healthcare facility in 2000–2012, we identified serrated lesions and categorized each as putative SSP or HP using a text search algorithm. We obtained 93 tissue samples for histologic and molecular analysis. Results: Serrated polyps were categorized as putative SSP (N = 920) and putative HP (N = 7159) by text search algorithm. Histologic examination of 93 samples identified 37 SSP, 11 probable SSP, and 45 HP. Of 26 putative SSP, 25 were SSP/probable SSP (96%) by histology. Of 67 putative HP, 44 were HP (66%) by histology. Reducing size criterion from ≥1 to ≥5 mm in the search algorithm caused improved sensitivity (77.1%) without decline in specificity (97.8%). Conclusions: A simple rules-based search to identify SSP provides “proof of principle” that SSP can be identified in a large electronic record set. Pilot data indicate defining large, right-sided polyps as ≥5 mm provides adequate sensitivity to detect SSP from electronic records while maintaining high specificity.
AB - Background/Aims: The serrated pathway accounts for 15–25% of sporadic colorectal cancer (CRC). In our study, we sought to accurately characterize sessile serrated polyps (SSP) in a population by electronically interrogating colonoscopy patients’ endoscopy and pathology reports using a rules-based text search of pre-defined SSP-related terms. To this aim, we compared a sample of putative SSP and hyperplastic polyps (HP) using our algorithm to a determination of SSP or HP by pathologist and molecular examination to determine the feasibility of large-scale identification of SSP in electronic medical records. Methods: In 23,990 endoscopy reports from colonoscopies with pathology performed at a University of Utah Healthcare facility in 2000–2012, we identified serrated lesions and categorized each as putative SSP or HP using a text search algorithm. We obtained 93 tissue samples for histologic and molecular analysis. Results: Serrated polyps were categorized as putative SSP (N = 920) and putative HP (N = 7159) by text search algorithm. Histologic examination of 93 samples identified 37 SSP, 11 probable SSP, and 45 HP. Of 26 putative SSP, 25 were SSP/probable SSP (96%) by histology. Of 67 putative HP, 44 were HP (66%) by histology. Reducing size criterion from ≥1 to ≥5 mm in the search algorithm caused improved sensitivity (77.1%) without decline in specificity (97.8%). Conclusions: A simple rules-based search to identify SSP provides “proof of principle” that SSP can be identified in a large electronic record set. Pilot data indicate defining large, right-sided polyps as ≥5 mm provides adequate sensitivity to detect SSP from electronic records while maintaining high specificity.
KW - Colonoscopy
KW - Receiver operating characteristic curve
KW - Sessile serrated adenoma/polyp
KW - Text mining
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U2 - 10.1007/s10620-017-4543-9
DO - 10.1007/s10620-017-4543-9
M3 - Article
C2 - 28315031
AN - SCOPUS:85015710271
SN - 0163-2116
VL - 62
SP - 1455
EP - 1463
JO - Digestive diseases and sciences
JF - Digestive diseases and sciences
IS - 6
ER -