TY - JOUR
T1 - Epilepsyecosystem.org
T2 - Crowd-sourcing reproducible seizure prediction with long-term human intracranial EEG
AU - Kuhlmann, Levin
AU - Karoly, Philippa
AU - Freestone, Dean R.
AU - Brinkmann, Benjamin H.
AU - Temko, Andriy
AU - Barachant, Alexandre
AU - Li, Feng
AU - Titericz, Gilberto
AU - Lang, Brian W.
AU - Lavery, Daniel
AU - Roman, Kelly
AU - Broadhead, Derek
AU - Dobson, Scott
AU - Jones, Gareth
AU - Tang, Qingnan
AU - Ivanenko, Irina
AU - Panichev, Oleg
AU - Proix, Timothée
AU - Náhlík, Michal
AU - Grunberg, Daniel B.
AU - Reuben, Chip
AU - Worrell, Gregory
AU - Litt, Brian
AU - Liley, David T.J.
AU - Grayden, David B.
AU - Cook, Mark J.
N1 - Funding Information:
This work was supported by American Epilepsy Society, The MathWorks Corporation, National Institute of Neurological Disorders and Stroke (NIH 1 U24 NS063930-01), The University of Melbourne, and National Health and Medical Research Council (APP1130468). A.T. received support from Science
Funding Information:
Foundation Ireland Research Centre Award (12/RC/2272). T.P. was supported by the National Institute of Neurological Disorders and Stroke (NINDS) (R01NS079533 - Truccolo Lab) and U.S. Department of Veterans Affairs, Merit Review Award (I01RX000668 - Truccolo Lab). G.W. and B.B. received support from National Institutes of Health (NIH) (R01-NS92882 and UH2NS095495). B.L. received support from NIH (UH2-NS095495-01, R01NS092882, 1K01ES025436-01, 5-U24-NS-063930-05, R01NS099348), Mirowski Foundation and Neil and Barbara Smit. L.K. and D.T.J.L. were supported by James S McDonnell Foundation (220020419).
Publisher Copyright:
© The Author(s) (2018).
PY - 2018/9/1
Y1 - 2018/9/1
N2 - Accurate seizure prediction will transform epilepsy management by offering warnings to patients or triggering interventions. However, state-of-the-art algorithm design relies on accessing adequate long-term data. Crowd-sourcing ecosystems leverage quality data to enable cost-effective, rapid development of predictive algorithms. A crowd-sourcing ecosystem for seizure prediction is presented involving an international competition, a follow-up held-out data evaluation, and an online platform, Epilepsyecosystem.org, for yielding further improvements in prediction performance. Crowd-sourced algorithms were obtained via the 'Melbourne-University AES-MathWorks-NIH Seizure Prediction Challenge' conducted at kaggle.com. Long-term continuous intracranial electroencephalography (iEEG) data (442 days of recordings and 211 lead seizures per patient) from predictionresistant patients who had the lowest seizure prediction performances from the NeuroVista Seizure Advisory System clinical trial were analysed. Contestants (646 individuals in 478 teams) from around the world developed algorithms to distinguish between 10- min inter-seizure versus pre-seizure data clips. Over 10 000 algorithms were submitted. The top algorithms as determined by using the contest data were evaluated on a much larger held-out dataset. The data and top algorithms are available online for further investigation and development. The top performing contest entry scored 0.81 area under the classification curve. The performance reduced by only 6.7% on held-out data. Many other teams also showed high prediction reproducibility. Pseudo-prospective evaluation demonstrated that many algorithms, when used alone or weighted by circadian information, performed better than the benchmarks, including an average increase in sensitivity of 1.9 times the original clinical trial sensitivity for matched time in warning. These results indicate that clinically-relevant seizure prediction is possible in a wider range of patients than previously thought possible. Moreover, different algorithms performed best for different patients, supporting the use of patient-specific algorithms and long-term monitoring. The crowd-sourcing ecosystem for seizure prediction will enable further worldwide community study of the data to yield greater improvements in prediction performance by way of competition, collaboration and synergism.
AB - Accurate seizure prediction will transform epilepsy management by offering warnings to patients or triggering interventions. However, state-of-the-art algorithm design relies on accessing adequate long-term data. Crowd-sourcing ecosystems leverage quality data to enable cost-effective, rapid development of predictive algorithms. A crowd-sourcing ecosystem for seizure prediction is presented involving an international competition, a follow-up held-out data evaluation, and an online platform, Epilepsyecosystem.org, for yielding further improvements in prediction performance. Crowd-sourced algorithms were obtained via the 'Melbourne-University AES-MathWorks-NIH Seizure Prediction Challenge' conducted at kaggle.com. Long-term continuous intracranial electroencephalography (iEEG) data (442 days of recordings and 211 lead seizures per patient) from predictionresistant patients who had the lowest seizure prediction performances from the NeuroVista Seizure Advisory System clinical trial were analysed. Contestants (646 individuals in 478 teams) from around the world developed algorithms to distinguish between 10- min inter-seizure versus pre-seizure data clips. Over 10 000 algorithms were submitted. The top algorithms as determined by using the contest data were evaluated on a much larger held-out dataset. The data and top algorithms are available online for further investigation and development. The top performing contest entry scored 0.81 area under the classification curve. The performance reduced by only 6.7% on held-out data. Many other teams also showed high prediction reproducibility. Pseudo-prospective evaluation demonstrated that many algorithms, when used alone or weighted by circadian information, performed better than the benchmarks, including an average increase in sensitivity of 1.9 times the original clinical trial sensitivity for matched time in warning. These results indicate that clinically-relevant seizure prediction is possible in a wider range of patients than previously thought possible. Moreover, different algorithms performed best for different patients, supporting the use of patient-specific algorithms and long-term monitoring. The crowd-sourcing ecosystem for seizure prediction will enable further worldwide community study of the data to yield greater improvements in prediction performance by way of competition, collaboration and synergism.
KW - Open Data Ecosystem for the Neurosciences
KW - epilepsy
KW - intracranial EEG
KW - refractory epilepsy
KW - seizure prediction
UR - http://www.scopus.com/inward/record.url?scp=85052565788&partnerID=8YFLogxK
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U2 - 10.1093/brain/awy210
DO - 10.1093/brain/awy210
M3 - Article
C2 - 30101347
AN - SCOPUS:85052565788
SN - 0006-8950
VL - 141
SP - 2619
EP - 2630
JO - Brain
JF - Brain
IS - 9
ER -