Deep Learning Based Classiftcation of Normal and Hepatic Fibrosis Mouse Model Using Digital Pathology Images

Ayesha Kousar, Shivam Damani, Priyanka Anvekar, Arush Rajotia, Keerthy Gopalakrishnan, Bhavana Baraskar, Vaishnavi K. Modi, Keirthana Aedma, Joshika Agarwal, Hima Varsha Voruganti, Mansunderbir Singh, Enis Kostallari, Shivaram P. Arunachalam

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Hepatic fibrosis, or the excessive accumulation of extracellular matrix proteins, such as collagen, is the hallmark of the most prevalent type of chronic liver disease. Advanced liver fibrosis has adverse consequences such as cirrhosis, liver failure, and portal hypertension, which frequently call for liver transplantation. Current research on liver fibrosis is heavily focused on understanding the molecular mechanisms underlying this disorder and provides an up-to-date overview of deep learning models used in experimental liver fibrosis research. We evaluated the original and augmented mice liver dataset using a convolutional neural network, VGG16, and a stratified k-fold cross validation model. The results obtained from VGG16 models were taken into consideration due to their suitable object recognition and classification algorithm. Our study suggested that the deep learning VGG16 model can classify healthy and fibrotic liver cells with an accuracy of 95% despite training and validation loss. This study creates a foundation for future research that will employ deep learning models as a non-invasive tool to gauge the severity of the disease and identify the best treatment course to hinder the advancement of fibrosis.

Original languageEnglish (US)
Title of host publicationProceedings - 2022 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022
EditorsDonald Adjeroh, Qi Long, Xinghua Shi, Fei Guo, Xiaohua Hu, Srinivas Aluru, Giri Narasimhan, Jianxin Wang, Mingon Kang, Ananda M. Mondal, Jin Liu
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages2308-2313
Number of pages6
ISBN (Electronic)9781665468190
DOIs
StatePublished - 2022
Event2022 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022 - Las Vegas, United States
Duration: Dec 6 2022Dec 8 2022

Publication series

NameProceedings - 2022 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022

Conference

Conference2022 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022
Country/TerritoryUnited States
CityLas Vegas
Period12/6/2212/8/22

ASJC Scopus subject areas

  • Psychiatry and Mental health
  • Information Systems and Management
  • Biomedical Engineering
  • Medicine (miscellaneous)
  • Cardiology and Cardiovascular Medicine
  • Health Informatics

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