Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota

Lindsey Albenberg, Tatiana V. Esipova, Colleen P. Judge, Kyle Bittinger, Jun Chen, Alice Laughlin, Stephanie Grunberg, Robert N. Baldassano, James D. Lewis, Hongzhe Li, Stephen R. Thom, Frederic D. Bushman, Sergei A. Vinogradov, Gary D. Wu

Research output: Contribution to journalArticlepeer-review

364 Scopus citations


Background & Aims The gut microbiota is a complex and densely populated community in a dynamic environment determined by host physiology. We investigated how intestinal oxygen levels affect the composition of the fecal and mucosally adherent microbiota.

Methods We used the phosphorescence quenching method and a specially designed intraluminal oxygen probe to dynamically quantify gut luminal oxygen levels in mice. 16S ribosomal RNA gene sequencing was used to characterize the microbiota in intestines of mice exposed to hyperbaric oxygen, human rectal biopsy and mucosal swab samples, and paired human stool samples.

Results Average Po2 values in the lumen of the cecum were extremely low (<1 mm Hg). In altering oxygenation of mouse intestines, we observed that oxygen diffused from intestinal tissue and established a radial gradient that extended from the tissue interface into the lumen. Increasing tissue oxygenation with hyperbaric oxygen altered the composition of the gut microbiota in mice. In human beings, 16S ribosomal RNA gene analyses showed an increased proportion of oxygen-tolerant organisms of the Proteobacteria and Actinobacteria phyla associated with rectal mucosa, compared with feces. A consortium of asaccharolytic bacteria of the Firmicute and Bacteroidetes phyla, which primarily metabolize peptones and amino acids, was associated primarily with mucus. This could be owing to the presence of proteinaceous substrates provided by mucus and the shedding of the intestinal epithelium.

Conclusions In an analysis of intestinal microbiota of mice and human beings, we observed a radial gradient of microbes linked to the distribution of oxygen and nutrients provided by host tissue.

Original languageEnglish (US)
Pages (from-to)1055-1063.e8
Issue number5
StatePublished - Nov 1 2014


  • Aerobic
  • Anaerobic
  • Microbe
  • Spatial Gradient of Oxygen

ASJC Scopus subject areas

  • Hepatology
  • Gastroenterology


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