TY - JOUR
T1 - MYBPC3 haplotype linked to hypertrophic cardiomyopathy in rhesus macaques (Macaca mulatta)
AU - Oldt, Robert F.
AU - Bussey, Kimberly J.
AU - Settles, Matthew L.
AU - Fass, Joseph N.
AU - Roberts, Jeffrey A.
AU - Reader, J. Rachel
AU - Komandoor, Srivathsan
AU - Abrich, Victor A.
AU - Kanthaswamy, Sreetharan
N1 - Funding Information:
We thank the staff of the Evolutionary and Forensic Genetics Lab at Arizona State University–West for their aid with sample preparation and the Genome Center Biotechnology and Bioinformatics core labs at University of California–Davis and Fluidigm Corporation for their assistance in optimizing our analysis and bioinformatics pipeline. This study was supported by NIH CNPRC base grant OD 5P51OD011107 and by the ASU Athletics Research Grant program graduate student award to RFO.
Publisher Copyright:
Copyright 2020 by the American Association for Laboratory Animal Science.
PY - 2020/10
Y1 - 2020/10
N2 - In humans, abnormal thickening of the left ventricle of the heart clinically defines hypertrophic cardiomyopathy (HCM), a common inherited cardiovascular disorder that can precede a sudden cardiac death event. The wide range of clinical presentations in HCM obscures genetic variants that may influence an individual’s susceptibility to sudden cardiac death. Although exon sequencing of major sarcomere genes can be used to detect high-impact causal mutations, this strategy is successful in only half of patient cases. The incidence of left ventricular hypertrophy (LVH) in a managed research colony of rhesus macaques provides an excellent comparative model in which to explore the genomic etiology of severe HCM and sudden cardiac death. Because no rhesus HCM-associated mutations have been reported, we used a next-generation genotyping assay that targets 7 sarcomeric rhesus genes within 63 genomic sites that are orthologous to human genomic regions known to harbor HCM disease variants. Amplicon sequencing was performed on 52 macaques with confirmed LVH and 42 unrelated, unaffected animals representing both the Indian and Chinese rhesus macaque subspecies. Bias-reduced logistic regression uncovered a risk haplotype in the rhesus MYBPC3 gene, which is frequently disrupted in both human and feline HCM; this haplotype implicates an intronic variant strongly associated with disease in either homozygous or carrier form. Our results highlight that leveraging evolutionary genomic data provides a unique, practical strategy for minimizing population bias in complex disease studies.
AB - In humans, abnormal thickening of the left ventricle of the heart clinically defines hypertrophic cardiomyopathy (HCM), a common inherited cardiovascular disorder that can precede a sudden cardiac death event. The wide range of clinical presentations in HCM obscures genetic variants that may influence an individual’s susceptibility to sudden cardiac death. Although exon sequencing of major sarcomere genes can be used to detect high-impact causal mutations, this strategy is successful in only half of patient cases. The incidence of left ventricular hypertrophy (LVH) in a managed research colony of rhesus macaques provides an excellent comparative model in which to explore the genomic etiology of severe HCM and sudden cardiac death. Because no rhesus HCM-associated mutations have been reported, we used a next-generation genotyping assay that targets 7 sarcomeric rhesus genes within 63 genomic sites that are orthologous to human genomic regions known to harbor HCM disease variants. Amplicon sequencing was performed on 52 macaques with confirmed LVH and 42 unrelated, unaffected animals representing both the Indian and Chinese rhesus macaque subspecies. Bias-reduced logistic regression uncovered a risk haplotype in the rhesus MYBPC3 gene, which is frequently disrupted in both human and feline HCM; this haplotype implicates an intronic variant strongly associated with disease in either homozygous or carrier form. Our results highlight that leveraging evolutionary genomic data provides a unique, practical strategy for minimizing population bias in complex disease studies.
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U2 - 10.30802/AALAS-CM-19-000108
DO - 10.30802/AALAS-CM-19-000108
M3 - Article
C2 - 32753092
AN - SCOPUS:85096152436
SN - 1532-0820
VL - 70
SP - 358
EP - 367
JO - Comparative medicine
JF - Comparative medicine
IS - 5
ER -